MolNFT v1 · #136235 · protein
Crystal structure of TNMS3, an antibiotic binding protein from streptomyces sp. CB03234
5UMP · GLYOXALASE/BLEOMYCIN resisance PROTEIN/DIOXYGENASE: “Crystal structure of TNMS3, an antibiotic binding protein from streptomyces sp. CB03234”. X-ray diffraction, 2 pockets (best druggability 0.61). MolNFT v1 #136235 on GenesisL1: 3D…
- PDB
- 5UMP
- Type
- protein
- Length
- 242 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GLYOXALASE/BLEOMYCIN resisance PROTEIN/DIOXYGENASE
- UniProt
- A0A125SA29
- Pockets
- 2 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 17% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | GLYOXALASE/BLEOMYCIN resisance PROTEIN/DIOXYGENASE | protein | 121 | 17% helix, 40% strand | A0A125SA29 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 232 | 0.61 | 0.81 | 30 | empty |
| 2 | 258 | 0.61 | 0.80 | 29 | empty |
Interfaces
1 interface between chains.
- A–B · 2012 Ų buried · 36 hydrogen bonds · protein-protein
Compared structures
- 5UMP · Crystal structure of TnmS3, an antibiotic binding protein from Streptomyces sp. CB03234 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A125SA29
- Elsewhere: RCSB PDB 5UMP · PDBe 5UMP · UniProt A0A125SA29
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