MolNFT v1 · #136031 · protein
Zinc-binding structure of a catalytic amyloid from solid-state NMR spectroscopy
5UGK · Ile-his-val-his-leu-gln-ile: “Zinc-binding structure of a catalytic amyloid from solid-state NMR spectroscopy”. Solid-state nmr, 1 ligand (ZN). MolNFT v1 #136031 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5UGK
- Type
- protein
- Length
- 84 residues
- Chains
- 12
- Method
- solid-state nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ile-his-val-his-leu-gln-ile
- Ligands
- ZN
Structure
solid-state nmr · 1 distinct chain · 0% helix, 71% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, E, G, I, K, O, Q, S, U, W, Y | Ile-his-val-his-leu-gln-ile | protein | 7 | 0% helix, 71% strand | — |
Ligands and binding sites
- ZN · Zinc ion · metal · 12 copies · chains A, C, E, G, I, K, O, Q, S, U, W, Y
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
26 interfaces between chains.
- I–K · 347 Ų buried · 11 hydrogen bonds · protein-protein
- S–U · 344 Ų buried · 11 hydrogen bonds · protein-protein
- W–Y · 344 Ų buried · 11 hydrogen bonds · protein-protein
- E–G · 342 Ų buried · 9 hydrogen bonds · protein-protein
- A–C · 342 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 5UGK · Zinc-Binding Structure of a Catalytic Amyloid from Solid-State NMR Spectroscopy · the same entry in another collection · chain O against O, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5UGK · PDBe 5UGK
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.