MolNFT v1 · #135962 · protein

Crystal structure of 354NC102 Fab

5UEL · 354NC102 Fab heavy chain: “Crystal structure of 354NC102 Fab”. X-ray diffraction, 1 ligand (SO4), 3 pockets (best druggability 0.56). MolNFT v1 #135962 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5UEL
Type: protein
Length: 448 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 354NC102 Fab heavy chain; 354NC102 Fab light chain
Ligands: SO4
Pockets: 3 · best druggability 0.56

Structure

x-ray diffraction · 2 distinct chains · 8% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
H	354NC102 Fab heavy chain	protein	232	9% helix, 48% strand	—
L	354NC102 Fab light chain	protein	216	7% helix, 52% strand	—

Ligands and binding sites

SO4 · Sulfate ion · ion · 5 copies · chains H, L

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	338	0.56	0.75	52	empty
2	204	0.51	0.77	27	empty
3	60	0.28	0.73	15	empty

Interfaces

1 interface between chains.

H–L · 1986 Å² buried · 10 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

5UEL · Crystal structure of 354NC102 Fab · the same entry in another collection · chain H against H, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5UEL · PDBe 5UEL

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.