MolNFT v1 · #135872 · protein
Crystal structure of beta-barrel-like, uncharacterized protein of COG5400 from brucella abortus
5UC0 · Uncharacterized protein COG5400: “Crystal structure of beta-barrel-like, uncharacterized protein of COG5400 from brucella abortus”. X-ray diffraction, 2 ligands (SO4, CL), 1 pocket (best druggability 0.59). MolNFT v1 #135872 on…
- PDB
- 5UC0
- Type
- protein
- Length
- 320 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein COG5400
- UniProt
- Q2YQA6
- Ligands
- SO4, CL
- Pockets
- 1 · best druggability 0.59
Structure
x-ray diffraction · 2 distinct chains · 23% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein COG5400 | protein | 161 | 24% helix, 37% strand | Q2YQA6 |
| B | Uncharacterized protein COG5400 | protein | 159 | 22% helix, 38% strand | Q2YQA6 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 4 copies · chains A, B
- CL · Chloride ion · ion · 2 copies · chains A
- 1PE · Pentaethylene glycol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 95 | 0.59 | 0.87 | 24 | empty |
Interfaces
1 interface between chains.
- A–B · 490 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 5UC0 · Crystal Structure of Beta-barrel-like, Uncharacterized Protein of COG5400 from Brucella… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2YQA6
- Elsewhere: RCSB PDB 5UC0 · PDBe 5UC0 · UniProt Q2YQA6
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