MolNFT v1 · #135850 · protein
Crystal structure of the N-terminal domain (domain 1) of rctb, rctb-1- 124-L48M
5UBD · Rctb replication initiator protein: “Crystal structure of the N-terminal domain (domain 1) of rctb, rctb-1- 124-L48M”. X-ray diffraction, 2 pockets (best druggability 0.68). MolNFT v1 #135850 on GenesisL1: 3D structure, binding…
- PDB
- 5UBD
- Type
- protein
- Length
- 232 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rctb replication initiator protein
- UniProt
- A0A085QGR2
- Pockets
- 2 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Rctb replication initiator protein | protein | 116 | 42% helix, 16% strand | A0A085QGR2 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 546 | 0.68 | 0.78 | 44 | empty |
| 2 | 72 | 0.40 | 0.79 | 26 | empty |
Interfaces
1 interface between chains.
- A–B · 515 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 5UBD · Crystal structure of the N-terminal domain (domain 1) of RctB, RctB-1-124-L48M · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A085QGR2
- Elsewhere: RCSB PDB 5UBD · PDBe 5UBD · UniProt A0A085QGR2
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