MolNFT v1 · #135818 · protein
Crystal structure of the coiled-coil domain from listeria innocua phage integrase (trigonal form)
5UAE · Putative integrase: “Crystal structure of the coiled-coil domain from listeria innocua phage integrase (trigonal form)”. X-ray diffraction, 1 pocket (best druggability 0.36). MolNFT v1 #135818 on GenesisL1: 3D structure, binding…
- PDB
- 5UAE
- Type
- protein
- Length
- 238 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative integrase
- UniProt
- Q928V6
- Pockets
- 1 · best druggability 0.36
Structure
x-ray diffraction · 4 distinct chains · 83% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative integrase | protein | 62 | 87% helix, 0% strand | Q928V6 |
| B | Putative integrase | protein | 56 | 84% helix, 0% strand | Q928V6 |
| C | Putative integrase | protein | 61 | 80% helix, 0% strand | Q928V6 |
| D | Putative integrase | protein | 59 | 80% helix, 0% strand | Q928V6 |
Ligands and binding sites
- FLC · Citrate anion · additive · 5 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 105 | 0.36 | 0.74 | 15 | FLC |
Interfaces
3 interfaces between chains.
- C–D · 530 Ų buried · 4 hydrogen bonds · protein-protein
- A–B · 502 Ų buried · 6 hydrogen bonds · protein-protein
- B–C · 426 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 5UAE · Crystal structure of the coiled-coil domain from Listeria Innocua Phage Integrase… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q928V6
- Elsewhere: RCSB PDB 5UAE · PDBe 5UAE · UniProt Q928V6
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