MolNFT v1 · #135627 · protein
Crystal structure of a fructose-bisphosphate aldolase from neisseria gonorrhoeae
5U4N · Fructose-1: “Crystal structure of a fructose-bisphosphate aldolase from neisseria gonorrhoeae”. X-ray diffraction, 1 ligand (PO4), 4 pockets (best druggability 0.42). MolNFT v1 #135627 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5U4N
- Type
- protein
- Length
- 350 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fructose-1
- EC
- 4.1.2.13
- UniProt
- A0A1D3HPF5
- Ligands
- PO4
- Pockets
- 4 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fructose-1 (EC 4.1.2.13) | protein | 350 | 47% helix, 14% strand | A0A1D3HPF5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 73 | 0.42 | 0.80 | 28 | empty |
| 2 | 80 | 0.35 | 0.76 | 16 | empty |
| 3 | 69 | 0.31 | 0.75 | 18 | empty |
| 4 | 58 | 0.30 | 0.76 | 17 | empty |
Compared structures
- 5U4N · Crystal structure of a fructose-bisphosphate aldolase from Neisseria gonorrhoeae · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1D3HPF5
- Elsewhere: RCSB PDB 5U4N · PDBe 5U4N · UniProt A0A1D3HPF5
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