MolNFT v1 · #135567 · protein
Crystal structure of the HSP104 N-terminal domain from saccharomyces cerevisiae
5U2U · Heat shock protein 104: “Crystal structure of the HSP104 N-terminal domain from saccharomyces cerevisiae”. X-ray diffraction, 5 pockets (best druggability 0.61). MolNFT v1 #135567 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5U2U
- Type
- protein
- Length
- 476 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Heat shock protein 104
- UniProt
- P31539
- Pockets
- 5 · best druggability 0.61
Structure
x-ray diffraction · 3 distinct chains · 56% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Heat shock protein 104 | protein | 157 | 57% helix, 4% strand | P31539 |
| B | Heat shock protein 104 | protein | 156 | 57% helix, 4% strand | P31539 |
| C | Heat shock protein 104 | protein | 163 | 55% helix, 4% strand | P31539 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 458 | 0.61 | 0.76 | 47 | empty |
| 2 | 289 | 0.57 | 0.77 | 36 | empty |
| 3 | 96 | 0.52 | 0.83 | 16 | empty |
| 4 | 82 | 0.48 | 0.82 | 17 | empty |
| 5 | 60 | 0.37 | 0.79 | 14 | empty |
Interfaces
2 interfaces between chains.
- B–C · 632 Ų buried · 15 hydrogen bonds · protein-protein
- A–B · 523 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 5U2U · Crystal structure of the Hsp104 N-terminal domain from Saccharomyces cerevisiae · the same entry in another collection · chain A against A, TM-score 1.00
- P31539 · AlphaFold monomer V2.0 prediction for heat shock protein 104 (P31539) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P31539
- Elsewhere: RCSB PDB 5U2U · PDBe 5U2U · UniProt P31539
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