MolNFT v1 · #135562 · protein
Crystal structure of zn-binding triple mutant of gh family 9 endoglucanase J30
5U2O · J30 cch: “Crystal structure of zn-binding triple mutant of gh family 9 endoglucanase J30”. X-ray diffraction, 1 ligand (ZN), 4 pockets (best druggability 0.68). MolNFT v1 #135562 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 5U2O
- Type
- protein
- Length
- 543 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- J30 cch
- Ligands
- ZN
- Pockets
- 4 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | J30 cch | protein | 543 | 42% helix, 13% strand | — |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
- GOL · Glycerol · additive · 4 copies · chains A
- FLC · Citrate anion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 537 | 0.68 | 0.78 | 34 | FLC |
| 2 | 189 | 0.54 | 0.78 | 22 | GOL |
| 3 | 52 | 0.33 | 0.77 | 13 | empty |
| 4 | 53 | 0.27 | 0.74 | 22 | empty |
Compared structures
- 5U2O · Crystal structure of Zn-binding triple mutant of GH family 9 endoglucanase J30 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5U2O · PDBe 5U2O
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