MolNFT v1 · #135450 · protein
Structure of the bldd CTD(D116A)-(C-di-GMP)2, form 2
5TZG · DNA-binding protein: “Structure of the bldd CTD(D116A)-(C-di-GMP)2, form 2”. X-ray diffraction, 2 ligands (C2E, ZN). MolNFT v1 #135450 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5TZG
- Type
- protein
- Length
- 151 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA-binding protein
- UniProt
- F2RCL8
- Ligands
- C2E, ZN
Structure
x-ray diffraction · 2 distinct chains · 62% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | DNA-binding protein | protein | 76 | 59% helix, 11% strand | F2RCL8 |
| A | DNA-binding protein | protein | 75 | 64% helix, 12% strand | F2RCL8 |
Ligands and binding sites
- C2E · 9,9'-[(2r,3r,3as,5s,7ar,9r,10r,10as,12s,14ar)-3,5,10, 12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3, 2-D:3',2'-J][1,3,7,9,2, 8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) · ligand · 2 copies · chains C, A
- ZN · Zinc ion · metal · 2 copies · chains C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- C–A · 101 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 5TZG · Structure of the BldD CTD(D116A)-(c-di-GMP)2, form 2 · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F2RCL8
- Elsewhere: RCSB PDB 5TZG · PDBe 5TZG · UniProt F2RCL8
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