MolNFT v1 · #13543 · protein
Crystal structure of plasmepsin II from P falciparum in complex with inhibitor RS370
1LF2 · Plasmepsin 2: “Crystal structure of plasmepsin II from P falciparum in complex with inhibitor RS370”. X-ray diffraction, 1 ligand (R37), 2 pockets (best druggability 0.60). MolNFT v1 #13543 on GenesisL1: 3D structure, binding sites…
- PDB
- 1LF2
- Type
- protein
- Length
- 329 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Plasmepsin 2
- EC
- 3.4.23.39
- UniProt
- P46925
- Ligands
- R37
- Pockets
- 2 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 13% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Plasmepsin 2 (EC 3.4.23.39) | protein | 329 | 13% helix, 48% strand | P46925 |
Ligands and binding sites
- R37 · 3-amino-N-{4-[2-(2,6-dimethyl-phenoxy)-acetylamino]-3-hydroxy-1-isobutyl-5-phenyl-pentyl}-benzamide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 322 | 0.60 | 0.77 | 38 | R37 |
| 2 | 95 | 0.39 | 0.76 | 18 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 1LF2 · Crystal structure of plasmepsin II from P falciparum in complex with inhibitor RS370 · the same entry in another collection · chain A against A, TM-score 1.00
- P46925 · AlphaFold monomer V2.0 prediction for plasmepsin-2 (P46925) · a predicted model of the same protein · chain A against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P46925
- Elsewhere: RCSB PDB 1LF2 · PDBe 1LF2 · UniProt P46925
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.