MolNFT v1 · #135265 · protein

1.9 ångström resolution crystal structure of maltose-binding periplasmic protein male from listeria monocytogenes in complex with maltose

5TU0 · LMO2125 protein: “1.9 ångström resolution crystal structure of maltose-binding periplasmic protein male from listeria…”. X-ray diffraction, 2 ligands (TTN, GLC), 2 pockets (best druggability 0.57). MolNFT v1 #135265 on GenesisL1: 3D…

PDB: 5TU0
Type: protein
Length: 385 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: LMO2125 protein
UniProt: Q929P4
Ligands: TTN, GLC
Pockets: 2 · best druggability 0.57

Structure

x-ray diffraction · 1 distinct chain · 50% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	LMO2125 protein	protein	385	50% helix, 18% strand	Q929P4

Ligands and binding sites

TTN · Tartronate · ligand · chains A
GLC · alpha-D-glucopyranose · sugar · 2 copies · chains A
PGE · Triethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	250	0.57	0.78	50	GLC
2	59	0.34	0.77	10	empty

Compared structures

5TU0 · 1.9 Angstrom Resolution Crystal Structure of Maltose-Binding Periplasmic Protein MalE… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q929P4
Elsewhere: RCSB PDB 5TU0 · PDBe 5TU0 · UniProt Q929P4

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