MolNFT v1 · #135228 · protein
Toxic shock syndrome toxin-1: orthorhombic P222(1) crystal form
5TSS: “Toxic shock syndrome toxin-1: orthorhombic P222(1) crystal form”. X-ray diffraction, 2 pockets (best druggability 0.43). MolNFT v1 #135228 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5TSS
- Type
- protein
- Length
- 388 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Toxic shock syndrome toxin-1
- UniProt
- P06886
- Pockets
- 2 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 16% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Toxic shock syndrome toxin-1 | protein | 194 | 16% helix, 41% strand | P06886 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 168 | 0.43 | 0.74 | 23 | empty |
| 2 | 61 | 0.38 | 0.79 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 219 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 5TSS · Toxic shock syndrome toxin-1: orthorhombic P222(1) crystal form · the same entry in another collection · chain A against A, TM-score 1.00
- P06886 · AlphaFold monomer V2.0 prediction for toxic shock syndrome toxin-1 (P06886) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06886
- Elsewhere: RCSB PDB 5TSS · PDBe 5TSS · UniProt P06886
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