MolNFT v1 · #135219 · protein
Pilb from geobacter metallireducens bound to AMP-pnp
5TSH: “Pilb from geobacter metallireducens bound to AMP-pnp”. X-ray diffraction, 4 ligands (ANP, ADP, ZN). MolNFT v1 #135219 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5TSH
- Type
- protein
- Length
- 2,281 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q39VU7
- Ligands
- ANP, ADP, ZN, MG
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 375 | — | Q39VU7 |
| B | — | protein | 376 | — | Q39VU7 |
| C | — | protein | 382 | — | Q39VU7 |
| D | — | protein | 379 | — | Q39VU7 |
| E | — | protein | 387 | — | Q39VU7 |
| F | — | protein | 382 | — | Q39VU7 |
Ligands and binding sites
- ANP · Phosphoaminophosphonic acid-adenylate ester · ligand · 4 copies · chains A, B, C, D
- ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains E, F
- ZN · Zinc ion · metal · 6 copies · chains A, B, C, D, E, F
- MG · Magnesium ion · metal · 2 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5TSH · PilB from Geobacter metallireducens bound to AMP-PNP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q39VU7
- Elsewhere: RCSB PDB 5TSH · PDBe 5TSH · UniProt Q39VU7
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