MolNFT v1 · #135216 · protein
2.35 ångström crystal structure minor lipoprotein from acinetobacter baumannii.
5TSE · Lps-assembly lipoprotein lpte: “2.35 ångström crystal structure minor lipoprotein from acinetobacter baumannii.”. X-ray diffraction, 2 pockets (best druggability 0.76). MolNFT v1 #135216 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5TSE
- Type
- protein
- Length
- 397 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lps-assembly lipoprotein lpte
- UniProt
- V5VH20
- Pockets
- 2 · best druggability 0.76
Structure
x-ray diffraction · 3 distinct chains · 29% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lps-assembly lipoprotein lpte | protein | 136 | 28% helix, 37% strand | V5VH20 |
| B | Lps-assembly lipoprotein lpte | protein | 134 | 29% helix, 37% strand | V5VH20 |
| C | Lps-assembly lipoprotein lpte | protein | 127 | 31% helix, 37% strand | V5VH20 |
Ligands and binding sites
- FMT · Formic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 688 | 0.76 | 0.82 | 75 | empty |
| 2 | 52 | 0.33 | 0.78 | 16 | empty |
Interfaces
3 interfaces between chains.
- A–B · 527 Ų buried · 6 hydrogen bonds · protein-protein
- B–C · 509 Ų buried · 6 hydrogen bonds · protein-protein
- A–C · 436 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 5TSE · 2.35 Angstrom Crystal Structure Minor Lipoprotein from Acinetobacter baumannii. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt V5VH20
- Elsewhere: RCSB PDB 5TSE · PDBe 5TSE · UniProt V5VH20
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