MolNFT v1 · #135135 · RNA
Crystal structure of an exonuclease resistant RNA from zika virus
5TPY · RNA (71-mer): “Crystal structure of an exonuclease resistant RNA from zika virus”. X-ray diffraction, 1 ligand (MG), 3 pockets (best druggability 0.54). MolNFT v1 #135135 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5TPY
- Type
- RNA
- Length
- 71 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (71-mer)
- Ligands
- MG
- Pockets
- 3 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (71-mer) | rna | 71 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 328 | 0.54 | 0.76 | 29 | empty |
| 2 | 148 | 0.37 | 0.73 | 15 | empty |
| 3 | 102 | 0.34 | 0.75 | 12 | empty |
Compared structures
- 5TPY · Crystal structure of an exonuclease resistant RNA from Zika virus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5TPY · PDBe 5TPY
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