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MolNFT v1 · #134992 · protein

Complex between human CD27 and Fab fragments of antibodies M2177 and H2191

5TLK: “Complex between human CD27 and Fab fragments of antibodies M2177 and H2191”. X-ray diffraction, 1 ligand (NAG). MolNFT v1 #134992 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
5TLK
Type
protein
Length
1,858 residues
Chains
10
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P26842
Ligands
NAG

Structure

x-ray diffraction · 7 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, E—protein215——
B—protein213——
C, G—protein215——
D—protein212——
F—protein212——
H—protein211——
X, Y—protein75—P26842

Ligands and binding sites

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains X, Y

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5TLK · Complex between human CD27 and Fab fragments of antibodies M2177 and H2191 · the same entry in another collection · chain Y against Y, TM-score 1.00
  • P26842 · AlphaFold monomer V2.0 prediction for CD27 antigen (P26842) · a predicted model of the same protein · chain Y against A, TM-score 0.97

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