MolNFT v1 · #134869 · protein
Crystal structure of G303A HDAC8 in complex with M344
5THT: “Crystal structure of G303A HDAC8 in complex with M344”. X-ray diffraction, 3 ligands (B3N, K, ZN). MolNFT v1 #134869 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5THT
- Type
- protein
- Length
- 1,421 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9BY41
- Ligands
- B3N, K, ZN
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 361 | — | Q9BY41 |
| B | — | protein | 360 | — | Q9BY41 |
| C | — | protein | 353 | — | Q9BY41 |
| D | — | protein | 347 | — | Q9BY41 |
Ligands and binding sites
- B3N · 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide · ligand · 4 copies · chains A, B, C, D
- K · Potassium ion · metal · 8 copies · chains A, B, C, D
- ZN · Zinc ion · metal · 4 copies · chains A, B, C, D
- EDO · 1,2-ethanediol · additive · 27 copies · chains A, B, D, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5THT · Crystal Structure of G303A HDAC8 in complex with M344 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9BY41
- Elsewhere: RCSB PDB 5THT · PDBe 5THT · UniProt Q9BY41
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