MolNFT v1 · #134771 · protein
Crystal structure of a tryptophanyl-tRNA synthetase from neisseria gonorrhoeae bound to tryptophan
5TEW · Tryptophan--tRNA ligase: “Crystal structure of a tryptophanyl-tRNA synthetase from neisseria gonorrhoeae bound to tryptophan”. X-ray diffraction, 2 ligands (TRP, SO4), 1 pocket (best druggability 0.72). MolNFT v1 #134771 on…
- PDB
- 5TEW
- Type
- protein
- Length
- 333 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tryptophan--tRNA ligase
- EC
- 6.1.1.2
- UniProt
- Q5F7X0
- Ligands
- TRP, SO4
- Pockets
- 1 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 57% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tryptophan--tRNA ligase (EC 6.1.1.2) | protein | 333 | 57% helix, 8% strand | Q5F7X0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 736 | 0.72 | 0.78 | 68 | TRP, SO4 |
Compared structures
- 5TEW · Crystal structure of a tryptophanyl-tRNA synthetase from Neisseria gonorrhoeae bound to… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5F7X0
- Elsewhere: RCSB PDB 5TEW · PDBe 5TEW · UniProt Q5F7X0
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