MolNFT v1 · #134598 · protein
Crystal structure of a peptide deformylase from burkholderia multivorans in complex with actinonin
5T8Z: “Crystal structure of a peptide deformylase from burkholderia multivorans in complex with actinonin”. X-ray diffraction, 2 ligands (BB2, FE2), 1 pocket (best druggability 0.47). MolNFT v1 #134598 on GenesisL1: 3D structure, binding…
- PDB
- 5T8Z
- Type
- protein
- Length
- 161 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptide deformylase
- EC
- 3.5.1.88
- UniProt
- A0A0H3KPJ9
- Ligands
- BB2, FE2
- Pockets
- 1 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptide deformylase (EC 3.5.1.88) | protein | 161 | 30% helix, 31% strand | A0A0H3KPJ9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 116 | 0.47 | 0.80 | 22 | BB2, FE2 |
Compared structures
- 5T8Z · Crystal structure of a peptide deformylase from Burkholderia multivorans in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H3KPJ9
- Elsewhere: RCSB PDB 5T8Z · PDBe 5T8Z · UniProt A0A0H3KPJ9
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