MolNFT v1 · #134570 · protein
Crystal structure of 10E8 Fab in complex with the mper epitope scaffold T117V2 and phosphatidylglycerol (06:0 pg)
5T85: “Crystal structure of 10E8 Fab in complex with the mper epitope scaffold T117V2 and phosphatidylglycerol (06:0…”. X-ray diffraction, 1 ligand (44G). MolNFT v1 #134570 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5T85
- Type
- protein
- Length
- 598 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- 44G
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | — | protein | 232 | — | — |
| L | — | protein | 212 | — | — |
| G | — | protein | 154 | — | — |
Ligands and binding sites
- 44G · (2S)-3-{[(R)-{[(2R)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-2-(hexanoyloxy)propyl hexanoate · ligand · chains H, L
- PGE · Triethylene glycol · additive · 2 copies · chains L, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5T85 · Crystal structure of 10E8 Fab in complex with the MPER epitope scaffold T117v2 and… · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5T85 · PDBe 5T85
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