MolNFT v1 · #134489 · protein
Tungsten-containing formylmethanofuran dehydrogenase from methanothermobacter wolfeii, trigonal form at 2.5 a.
5T5M: “Tungsten-containing formylmethanofuran dehydrogenase from methanothermobacter wolfeii, trigonal form at 2.5 a.”. X-ray diffraction, 7 ligands (SF4, MGD, MG). MolNFT v1 #134489 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5T5M
- Type
- protein
- Length
- 1,815 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- SF4, MGD, MG, ZN, K, W, H2S
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 569 | — | — |
| B | — | protein | 429 | — | — |
| C | — | protein | 269 | — | — |
| D | — | protein | 126 | — | — |
| F | — | protein | 342 | — | — |
| G | — | protein | 80 | — | — |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · 11 copies · chains B, F, G
- MGD · 2-amino-5,6-dimercapto-7-methyl-3,7,8A,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide · ligand · 2 copies · chains B, D
- MG · Magnesium ion · metal · 3 copies · chains A, B, C
- ZN · Zinc ion · metal · 2 copies · chains A
- K · Potassium ion · metal · chains B, D
- W · Tungsten ion · metal · chains B, D
- H2S · Hydrosulfuric acid · ion · chains B
- GOL · Glycerol · additive · 3 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5T5M · Tungsten-containing formylmethanofuran dehydrogenase from methanothermobacter wolfeii… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5T5M · PDBe 5T5M
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