MolNFT v1 · #134328 · protein

Synaptotagmin 1 C2A domain, cadmium-bound

5T0R · Synaptotagmin-1: “Synaptotagmin 1 C2A domain, cadmium-bound”. X-ray diffraction, 1 ligand (CD). MolNFT v1 #134328 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5T0R
Type: protein
Length: 125 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Synaptotagmin-1
UniProt: P46096
Ligands: CD

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 49% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Synaptotagmin-1	protein	125	6% helix, 49% strand	P46096

Ligands and binding sites

CD · Cadmium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5T0R · Synaptotagmin 1 C2A domain, cadmium-bound · the same entry in another collection · chain A against A, TM-score 1.00
P46096 · AlphaFold monomer V2.0 prediction for synaptotagmin-1 (P46096) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P46096
Elsewhere: RCSB PDB 5T0R · PDBe 5T0R · UniProt P46096

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.