MolNFT v1 · #134311 · protein
The structure of the type III effector HOPBA1
5T09 · Type III secretion system effector HOPBA1: “The structure of the type III effector HOPBA1”. X-ray diffraction, 2 ligands (K, CL), 1 pocket (best druggability 0.44). MolNFT v1 #134311 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5T09
- Type
- protein
- Length
- 217 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Type III secretion system effector HOPBA1
- UniProt
- A0A0Q0CD50
- Ligands
- K, CL
- Pockets
- 1 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Type III secretion system effector HOPBA1 | protein | 217 | 46% helix, 20% strand | A0A0Q0CD50 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 152 | 0.44 | 0.75 | 22 | CL |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 5T09 · The structure of the type III effector HopBA1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0Q0CD50
- Elsewhere: RCSB PDB 5T09 · PDBe 5T09 · UniProt A0A0Q0CD50
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