MolNFT v1 · #134199 · protein

Crystal structure of D141E variant of B. pseudomallei katg

5SX1: “Crystal structure of D141E variant of B. pseudomallei katg”. X-ray diffraction, 4 ligands (HEM, NA, OXY). MolNFT v1 #134199 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5SX1
Type: protein
Length: 1,426 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q3JNW6
Ligands: HEM, NA, OXY, PO4

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	—	protein	713	—	Q3JNW6

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains A, B
NA · Sodium ion · metal · 2 copies · chains A, B
OXY · Oxygen molecule · ion · 5 copies · chains A, B
PO4 · Phosphate ion · ion · 2 copies · chains A, B
MPD · (4S)-2-methyl-2,4-pentanediol · additive · 3 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5SX1 · Crystal structure of D141E variant of B. pseudomallei KatG · the same entry in another collection · chain A against A, TM-score 1.00
Q3JNW6 · AlphaFold monomer V2.0 prediction for catalase-peroxidase (Q3JNW6) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q3JNW6
Elsewhere: RCSB PDB 5SX1 · PDBe 5SX1 · UniProt Q3JNW6

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.