MolNFT v1 · #134197 · protein
Crystal structure of NP1-B17 TCR-H2DB-np complex
5SWZ: “Crystal structure of NP1-B17 TCR-H2DB-np complex”. X-ray diffraction, 2 ligands (NA, SO4). MolNFT v1 #134197 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5SWZ
- Type
- protein
- Length
- 3,248 residues
- Chains
- 20
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P01899, P01887
- Ligands
- NA, SO4
Structure
x-ray diffraction · 12 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, F, K | — | protein | 277 | — | P01899 |
| B, G, L | — | protein | 99 | — | P01887 |
| C, H, M, R | — | protein | 9 | — | — |
| D | — | protein | 198 | — | — |
| E, J | — | protein | 240 | — | — |
| I | — | protein | 186 | — | — |
| N | — | protein | 201 | — | — |
| O | — | protein | 241 | — | — |
| P | — | protein | 238 | — | P01899 |
| Q | — | protein | 98 | — | P01887 |
| S | — | protein | 203 | — | — |
| T | — | protein | 239 | — | — |
Ligands and binding sites
- NA · Sodium ion · metal · 6 copies · chains E, I, L, J, K, T
- SO4 · Sulfate ion · ion · 5 copies · chains D, A, E, K, O, T
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5SWZ · Crystal Structure of NP1-B17 TCR-H2Db-NP complex · the same entry in another collection · chain T against T, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P01899
- Every structure of UniProt P01887
- Elsewhere: RCSB PDB 5SWZ · PDBe 5SWZ · UniProt P01899 · UniProt P01887
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