MolNFT v1 · #133140 · protein
Pandda analysis group deposition -- crystal structure of SARS-cov-2 helicase in complex with Z85956652
5RML: “Pandda analysis group deposition -- crystal structure of SARS-cov-2 helicase in complex with Z85956652”. X-ray diffraction, 3 ligands (VXD, ZN, PO4). MolNFT v1 #133140 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5RML
- Type
- protein
- Length
- 1,157 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTD1
- Ligands
- VXD, ZN, PO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 585 | — | P0DTD1 |
| A | — | protein | 572 | — | P0DTD1 |
Ligands and binding sites
- VXD · N-(3-chloro-2-methylphenyl)glycinamide · ligand · chains A
- ZN · Zinc ion · metal · 6 copies · chains B, A
- PO4 · Phosphate ion · ion · 4 copies · chains B, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5RML · PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 helicase in complex… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTD1
- Elsewhere: RCSB PDB 5RML · PDBe 5RML · UniProt P0DTD1
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