MolNFT v1 · #133056 · protein

Pandda analysis group deposition -- crystal structure of phip in complex with Z53116498

5RK8 · PH-interacting protein: “Pandda analysis group deposition -- crystal structure of phip in complex with Z53116498”. X-ray diffraction, 1 ligand (UVJ), 1 pocket (best druggability 0.54). MolNFT v1 #133056 on GenesisL1: 3D structure…

PDB: 5RK8
Type: protein
Length: 119 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: PH-interacting protein
UniProt: Q8WWQ0
Ligands: UVJ
Pockets: 1 · best druggability 0.54

Structure

x-ray diffraction · 1 distinct chain · 69% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	PH-interacting protein	protein	119	69% helix, 0% strand	Q8WWQ0

Ligands and binding sites

UVJ · 3-(2-methyl-1H-benzimidazol-1-yl)propanamide · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	117	0.54	0.82	22	UVJ

Compared structures

5RK8 · PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with Z53116498 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8WWQ0
Elsewhere: RCSB PDB 5RK8 · PDBe 5RK8 · UniProt Q8WWQ0

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