MolNFT v1 · #132963 · protein
Crystal structure of kemp eliminase HG3 in unbound state, 277K
5RG4: “Crystal structure of kemp eliminase HG3 in unbound state, 277K”. X-ray diffraction, 1 ligand (SO4), 3 pockets (best druggability 0.82). MolNFT v1 #132963 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5RG4
- Type
- protein
- Length
- 600 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Kemp eliminase HG3
- UniProt
- P23360
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Kemp eliminase HG3 | protein | 300 | 44% helix, 20% strand | P23360 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A, B
- ACT · Acetate ion · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 281 | 0.82 | 0.94 | 28 | empty |
| 2 | 144 | 0.55 | 0.81 | 27 | empty |
| 3 | 131 | 0.53 | 0.81 | 26 | empty |
Interfaces
1 interface between chains.
- A–B · 947 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P23360
- Elsewhere: RCSB PDB 5RG4 · PDBe 5RG4 · UniProt P23360
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.