MolNFT v1 · #132845 · protein

Pandda analysis group deposition -- endothiapepsin ground state model 16

5RCU: “Pandda analysis group deposition -- endothiapepsin ground state model 16”. X-ray diffraction, 1 ligand (NA). MolNFT v1 #132845 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5RCU
Type: protein
Length: 330 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P11838
Ligands: NA

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	330	—	P11838

Ligands and binding sites

NA · Sodium ion · metal
GOL · Glycerol · additive · 3 copies · chains A
ACT · Acetate ion · additive · 2 copies · chains A
PGE · Triethylene glycol · additive · chains A
PG4 · Tetraethylene glycol · additive · chains A
PEG · Di(hydroxyethyl)ether · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5RCU · PanDDA analysis group deposition -- Endothiapepsin ground state model 16 · the same entry in another collection · chain A against A, TM-score 1.00
P11838 · AlphaFold monomer V2.0 prediction for endothiapepsin (P11838) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P11838
Elsewhere: RCSB PDB 5RCU · PDBe 5RCU · UniProt P11838

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