MolNFT v1 · #13252 · protein

Crystal structure of trichomonas vaginalis ferredoxin

1L5P: “Crystal structure of trichomonas vaginalis ferredoxin”. X-ray diffraction, 1 ligand (FES). MolNFT v1 #13252 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1L5P
Type: protein
Length: 279 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ferredoxin
UniProt: P21149
Ligands: FES

Structure

x-ray diffraction · 1 distinct chain · 20% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	Ferredoxin	protein	93	20% helix, 30% strand	P21149

Ligands and binding sites

FES · Fe2/s2 (inorganic) cluster · ligand · 3 copies · chains A, B, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

B–C · 213 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

1L5P · Crystal Structure of Trichomonas vaginalis Ferredoxin · the same entry in another collection · chain A against A, TM-score 1.00
P21149 · AlphaFold monomer V2.0 prediction for ferredoxin (P21149) · a predicted model of the same protein · chain B against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P21149
Elsewhere: RCSB PDB 1L5P · PDBe 1L5P · UniProt P21149

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.