MolNFT v1 · #132353 · protein

HUMRADA1.2 soaked with napht-2,3-diol overnight at 20 mm

5QUF: “HUMRADA1.2 soaked with napht-2,3-diol overnight at 20 mm”. X-ray diffraction, 2 ligands (D48, PO4), 1 pocket (best druggability 0.33). MolNFT v1 #132353 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5QUF
Type: protein
Length: 222 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Rada
Ligands: D48, PO4
Pockets: 1 · best druggability 0.33

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Rada	protein	222	38% helix, 26% strand	—

Ligands and binding sites

D48 · naphthalene-2,3-diol · ligand · chains A
PO4 · Phosphate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	67	0.33	0.76	15	PO4

Compared structures

5QUF · HumRadA1.2 soaked with napht-2,3-diol overnight at 20 mM · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5QUF · PDBe 5QUF

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