MolNFT v1 · #131981 · protein
Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal structure of NUDT5 in complex with Z239136710
5QK3: “Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal structure of…”. X-ray diffraction, 3 ligands (K3A, MG, CL). MolNFT v1 #131981 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5QK3
- Type
- protein
- Length
- 770 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9UKK9
- Ligands
- K3A, MG, CL
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 194 | — | Q9UKK9 |
| B | — | protein | 194 | — | Q9UKK9 |
| C | — | protein | 192 | — | Q9UKK9 |
| D | — | protein | 190 | — | Q9UKK9 |
Ligands and binding sites
- K3A · N-(5-methyl-1H-pyrazol-3-yl)acetamide · ligand · chains A, B
- MG · Magnesium ion · metal · 8 copies · chains A, B, C, D
- CL · Chloride ion · ion · chains B
- EDO · 1,2-ethanediol · additive · 3 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5QK3 · PanDDA analysis group deposition of models with modelled events (e.g. bound ligands)… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UKK9
- Elsewhere: RCSB PDB 5QK3 · PDBe 5QK3 · UniProt Q9UKK9
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