MolNFT v1 · #13184 · protein
Solution structure determination of the fully oxidized double mutant K9-10A cytochrome C7 from desulfuromonas acetoxidans, ensemble of 35 structures
1L3O: “Solution structure determination of the fully oxidized double mutant K9-10A cytochrome C7 from desulfuromonas…”. Solution nmr, 1 ligand (HEC), 1 pocket (best druggability 0.66). MolNFT v1 #13184 on GenesisL1: 3D structure, binding…
- PDB
- 1L3O
- Type
- protein
- Length
- 68 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C7
- UniProt
- P00137
- Ligands
- HEC
- Pockets
- 1 · best druggability 0.66
Structure
solution nmr · 1 distinct chain · 28% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome C7 | protein | 68 | 28% helix, 3% strand | P00137 |
Ligands and binding sites
- HEC · Heme C · ligand · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 391 | 0.66 | 0.80 | 42 | HEC |
Modifications
Observed in the structure: 6 cofactor (heme c attachment).
Compared structures
- 1L3O · Solution structure determination of the fully oxidized double mutant K9-10A cytochrome C7… · the same entry in another collection · chain A against A, TM-score 1.00
- P00137 · AlphaFold monomer V2.0 prediction for cytochrome C3 (P00137) · a predicted model of the same protein · chain A against A, TM-score 0.83
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00137
- Elsewhere: RCSB PDB 1L3O · PDBe 1L3O · UniProt P00137
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