MolNFT v1 · #131679 · protein

Crystal structure of endothiapepsin-NAT17-347283 complex

5QBO: “Crystal structure of endothiapepsin-NAT17-347283 complex”. X-ray diffraction, 1 ligand (D9V). MolNFT v1 #131679 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5QBO
Type: protein
Length: 330 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P11838
Ligands: D9V

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	330	—	P11838

Ligands and binding sites

D9V · (1S,2S,3S,4R,5R)-2-[(furan-2-ylmethyl)amino]-4-(piperidin-1-yl)-6,8-dioxabicyclo[3.2.1]octan-3-ol · ligand · 3 copies · chains A
GOL · Glycerol · additive · 3 copies · chains A
DMS · Dimethyl sulfoxide · additive · 3 copies · chains A
ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5QBO · Crystal structure of Endothiapepsin-NAT17-347283 complex · the same entry in another collection · chain A against A, TM-score 1.00
P11838 · AlphaFold monomer V2.0 prediction for endothiapepsin (P11838) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P11838
Elsewhere: RCSB PDB 5QBO · PDBe 5QBO · UniProt P11838

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