MolNFT v1 · #131192 · protein
Pandda analysis group deposition -- crystal structure of SP100 after initial refinement with no ligand modelled (structure 63)
5PY3: “Pandda analysis group deposition -- crystal structure of SP100 after initial refinement with no ligand…”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #131192 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5PY3
- Type
- protein
- Length
- 355 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P23497
- Ligands
- ZN
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 178 | — | P23497 |
| B | — | protein | 177 | — | P23497 |
Ligands and binding sites
- ZN · Zinc ion · metal · 5 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 2 copies · chains A, B
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P23497
- Elsewhere: RCSB PDB 5PY3 · PDBe 5PY3 · UniProt P23497
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