MolNFT v1 · #13087 · DNA
NMR solution structure of nogalamycin intercalation between co-axially stacked hairpins
1L0R · 5'-D(*AP*CP*GP*AP*AP*GP*TP*GP*CP*GP*AP*AP*GP*C)-3': “NMR solution structure of nogalamycin intercalation between co-axially stacked hairpins”. Solution nmr, 2 ligands (NGP, NA). MolNFT v1 #13087 on GenesisL1: 3D structure, binding…
- PDB
- 1L0R
- Type
- DNA
- Length
- 14 nucleotides
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*AP*CP*GP*AP*AP*GP*TP*GP*CP*GP*AP*AP*GP*C)-3'
- Ligands
- NGP, NA
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-D(*AP*CP*GP*AP*AP*GP*TP*GP*CP*GP*AP*AP*GP*C)-3' | dna | 14 | — | — |
Ligands and binding sites
- NGP · Nogalamycin (protonated form) · ligand · chains A
- NA · Sodium ion · metal · 12 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 1L0R · NMR Solution Structure of Nogalamycin Intercalation Between Co-Axially Stacked Hairpins · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1L0R · PDBe 1L0R
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