MolNFT v1 · #13048 · protein

Crystal structure of E. COLI 24KDA domain in complex with clorobiocin

1KZN · DNA gyrase subunit B: “Crystal structure of E. COLI 24KDA domain in complex with clorobiocin”. X-ray diffraction, 1 ligand (CBN), 1 pocket (best druggability 0.53). MolNFT v1 #13048 on GenesisL1: 3D structure, binding sites and…

PDB: 1KZN
Type: protein
Length: 186 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA gyrase subunit B
EC: 5.99.1.3
UniProt: P06982
Ligands: CBN
Pockets: 1 · best druggability 0.53

Structure

x-ray diffraction · 1 distinct chain · 31% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA gyrase subunit B (EC 5.99.1.3)	protein	186	31% helix, 30% strand	P06982

Ligands and binding sites

CBN · Clorobiocin · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	137	0.53	0.81	26	CBN

Compared structures

1KZN · Crystal Structure of E. coli 24kDa Domain in Complex with Clorobiocin · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P06982
Elsewhere: RCSB PDB 1KZN · PDBe 1KZN · UniProt P06982

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