MolNFT v1 · #13042 · protein
Structure of a pyrophosphate-dependent phosphofructokinase from the lyme disease spirochete borrelia burgdorferi
1KZH: “Structure of a pyrophosphate-dependent phosphofructokinase from the lyme disease spirochete borrelia…”. X-ray diffraction, 1 ligand (SO4), 11 pockets (best druggability 0.78). MolNFT v1 #13042 on GenesisL1: 3D structure, binding…
- PDB
- 1KZH
- Type
- protein
- Length
- 1,080 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphofructokinase
- EC
- 2.7.1.90
- UniProt
- A0A0H3C4C8
- Ligands
- SO4
- Pockets
- 11 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 47% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphofructokinase (EC 2.7.1.90) | protein | 550 | 47% helix, 17% strand | A0A0H3C4C8 |
| B | Phosphofructokinase (EC 2.7.1.90) | protein | 530 | 47% helix, 17% strand | A0A0H3C4C8 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 8 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
11 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 862 | 0.78 | 0.81 | 89 | SO4 |
| 2 | 145 | 0.65 | 0.87 | 24 | empty |
| 3 | 145 | 0.61 | 0.84 | 27 | empty |
| 4 | 258 | 0.59 | 0.79 | 34 | SO4 |
| 5 | 95 | 0.56 | 0.85 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 2217 Ų buried · 33 hydrogen bonds · protein-protein
Compared structures
- 1KZH · Structure of a pyrophosphate-dependent phosphofructokinase from the Lyme disease… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H3C4C8
- Elsewhere: RCSB PDB 1KZH · PDBe 1KZH · UniProt A0A0H3C4C8
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