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MolNFT v1 · #130330 · protein

Humanized rat comt in complex with 7-fluoro-6-(4-fluorophenyl)-8- hydroxy-3H-quinazolin-4-one

5PA2 · Catechol O-methyltransferase: “Humanized rat comt in complex with 7-fluoro-6-(4-fluorophenyl)-8- hydroxy-3H-quinazolin-4-one”. X-ray diffraction, 6 ligands (SAH, 7JU, D1D), 2 pockets (best druggability 0.49). MolNFT v1 #130330 on…

PDB
5PA2
Type
protein
Length
213 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Catechol O-methyltransferase
EC
2.1.1.6
UniProt
P22734
Ligands
SAH, 7JU, D1D, MG, CL, SO4
Pockets
2 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 20% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ACatechol O-methyltransferase (EC 2.1.1.6)protein21345% helix, 20% strandP22734

Ligands and binding sites

  • SAH · S-adenosyl-L-homocysteine · ligand · chains A
  • 7JU · 7-fluoranyl-6-(4-fluorophenyl)-8-oxidanyl-3~{H}-quinazolin-4-one · ligand · chains A
  • D1D · (4S,5S)-1,2-dithiane-4,5-diol · ligand · chains A
  • MG · Magnesium ion · metal · chains A
  • CL · Chloride ion · ion · chains A
  • SO4 · Sulfate ion · ion · chains A
  • NHE · 2-[N-cyclohexylamino]ethane sulfonic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
11160.490.8024SAH
2570.400.81147JU

Compared structures

  • 5PA2 · humanized rat COMT in complex with 7-fluoro-6-(4-fluorophenyl)-8-hydroxy-3H-quinazolin-4-o… · the same entry in another collection · chain A against A, TM-score 1.00
  • P22734 · AlphaFold monomer V2.0 prediction for catechol O-methyltransferase (P22734) · a predicted model of the same protein · chain A against A, TM-score 1.00

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