MolNFT v1 · #130314 · protein
BTK1 binds covalently to hy-15771 ono-4059
5P9M · Tyrosine-protein kinase btk: “BTK1 binds covalently to hy-15771 ono-4059”. X-ray diffraction, 1 ligand (7GB), 3 pockets (best druggability 0.70). MolNFT v1 #130314 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5P9M
- Type
- protein
- Length
- 271 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tyrosine-protein kinase btk
- EC
- 2.7.10.2
- UniProt
- Q06187
- Ligands
- 7GB
- Pockets
- 3 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tyrosine-protein kinase btk (EC 2.7.10.2) | protein | 271 | 44% helix, 17% strand | Q06187 |
Ligands and binding sites
- 7GB · 6-azanyl-9-[(3~{R})-1-[(~{E})-but-2-enoyl]pyrrolidin-3-yl]-7-(4-phenoxyphenyl)purin-8-one · ligand · chains A
- DMS · Dimethyl sulfoxide · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 343 | 0.70 | 0.83 | 54 | 7GB |
| 2 | 101 | 0.39 | 0.76 | 19 | empty |
| 3 | 52 | 0.30 | 0.75 | 10 | empty |
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q06187
- Elsewhere: RCSB PDB 5P9M · PDBe 5P9M · UniProt Q06187
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