GL1X · GenesisL1 explorer

MolNFT v1 · #130303 · protein

Rat catechol O-methyltransferase in complex with N-[2-[[5-(4- fluorophenyl)-2,3-DIHYDROXYBENZOYL]AMINO]ETHYL]-6-hydroxypyrimidine- 4-carboxamide at 1.45A

5P9B: “Rat catechol O-methyltransferase in complex with N-[2-[[5-(4…”. X-ray diffraction, 4 ligands (77P, MG, CL), 1 pocket (best druggability 0.51). MolNFT v1 #130303 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
5P9B
Type
protein
Length
215 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Catechol O-methyltransferase
EC
2.1.1.6
UniProt
P22734
Ligands
77P, MG, CL, PO4
Pockets
1 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 22% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ACatechol O-methyltransferase (EC 2.1.1.6)protein21545% helix, 22% strandP22734

Ligands and binding sites

  • 77P · N-[2-[[5-(4-fluorophenyl)-2,3-dihydroxybenzoyl]amino]ethyl]-6-hydroxypyrimidine-4-carboxamide · ligand · chains A
  • MG · Magnesium ion · metal · chains A
  • CL · Chloride ion · ion · 2 copies · chains A
  • PO4 · Phosphate ion · ion · chains A
  • NHE · 2-[N-cyclohexylamino]ethane sulfonic acid · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
11350.510.802777P

Compared structures

  • 5P9B · rat catechol O-methyltransferase in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
  • P22734 · AlphaFold monomer V2.0 prediction for catechol O-methyltransferase (P22734) · a predicted model of the same protein · chain A against A, TM-score 1.00

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