MolNFT v1 · #130303 · protein
Rat catechol O-methyltransferase in complex with N-[2-[[5-(4- fluorophenyl)-2,3-DIHYDROXYBENZOYL]AMINO]ETHYL]-6-hydroxypyrimidine- 4-carboxamide at 1.45A
5P9B: “Rat catechol O-methyltransferase in complex with N-[2-[[5-(4…”. X-ray diffraction, 4 ligands (77P, MG, CL), 1 pocket (best druggability 0.51). MolNFT v1 #130303 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5P9B
- Type
- protein
- Length
- 215 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Catechol O-methyltransferase
- EC
- 2.1.1.6
- UniProt
- P22734
- Ligands
- 77P, MG, CL, PO4
- Pockets
- 1 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Catechol O-methyltransferase (EC 2.1.1.6) | protein | 215 | 45% helix, 22% strand | P22734 |
Ligands and binding sites
- 77P · N-[2-[[5-(4-fluorophenyl)-2,3-dihydroxybenzoyl]amino]ethyl]-6-hydroxypyrimidine-4-carboxamide · ligand · chains A
- MG · Magnesium ion · metal · chains A
- CL · Chloride ion · ion · 2 copies · chains A
- PO4 · Phosphate ion · ion · chains A
- NHE · 2-[N-cyclohexylamino]ethane sulfonic acid · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 135 | 0.51 | 0.80 | 27 | 77P |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P22734
- Elsewhere: RCSB PDB 5P9B · PDBe 5P9B · UniProt P22734
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