MolNFT v1 · #129875 · protein
Complex of a C. perfringens O-glcnacase with a fragment hit
5OXD: “Complex of a C. perfringens O-glcnacase with a fragment hit”. X-ray diffraction, 2 ligands (B2W, CD). MolNFT v1 #129875 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5OXD
- Type
- protein
- Length
- 580 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q0TR53
- Ligands
- B2W, CD
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 580 | — | Q0TR53 |
Ligands and binding sites
- B2W · 5-(trifluoromethyl)-2,3-dihydro-1~{H}-1,4-diazepine · ligand · chains A
- CD · Cadmium ion · metal · 22 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- Q0TR53 · AlphaFold monomer V2.0 prediction for O-glcnacase nagj (Q0TR53) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0TR53
- Elsewhere: RCSB PDB 5OXD · PDBe 5OXD · UniProt Q0TR53
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