MolNFT v1 · #129870 · protein

Structure of enhanced cyan fluorescent protein at pH 5.0

5OX8 · Green fluorescent protein: “Structure of enhanced cyan fluorescent protein at pH 5.0”. X-ray diffraction, 2 ligands (B2H, CL), 1 pocket (best druggability 0.76). MolNFT v1 #129870 on GenesisL1: 3D structure, binding sites and…

PDB: 5OX8
Type: protein
Length: 224 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Green fluorescent protein
UniProt: P42212
Ligands: B2H, CL
Pockets: 1 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 12% helix, 52% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Green fluorescent protein	protein	224	12% helix, 52% strand	P42212

Ligands and binding sites

B2H · Chromophore (thr, trp, gly) · ligand · chains A
CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	95	0.76	0.97	28	B2H

Modifications

Observed in the structure: 2 covalent (covalent ligand).

Compared structures

5OX8 · Structure of Enhanced Cyan Fluorescent Protein at pH 5.0 · the same entry in another collection · chain A against A, TM-score 1.00
P42212 · AlphaFold monomer V2.0 prediction for green fluorescent protein (P42212) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P42212
Elsewhere: RCSB PDB 5OX8 · PDBe 5OX8 · UniProt P42212

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