MolNFT v1 · #129824 · protein
Crystal structure of MAB_4384 tetr
5OVY · Putative transcriptional regulator, tetr family: “Crystal structure of MAB_4384 tetr”. X-ray diffraction, 5 pockets (best druggability 0.81). MolNFT v1 #129824 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5OVY
- Type
- protein
- Length
- 402 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative transcriptional regulator, tetr family
- UniProt
- B1MJU8
- Pockets
- 5 · best druggability 0.81
Structure
x-ray diffraction · 2 distinct chains · 72% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Putative transcriptional regulator, tetr family | protein | 202 | 73% helix, 1% strand | B1MJU8 |
| A | Putative transcriptional regulator, tetr family | protein | 200 | 70% helix, 1% strand | B1MJU8 |
Pockets
5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 198 | 0.81 | 0.94 | 31 | empty |
| 2 | 181 | 0.81 | 0.95 | 25 | empty |
| 3 | 249 | 0.59 | 0.79 | 31 | empty |
| 4 | 160 | 0.53 | 0.80 | 20 | empty |
| 5 | 126 | 0.42 | 0.76 | 20 | empty |
Interfaces
1 interface between chains.
- B–A · 1780 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 5OVY · Crystal structure of MAB_4384 tetR · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B1MJU8
- Elsewhere: RCSB PDB 5OVY · PDBe 5OVY · UniProt B1MJU8
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