MolNFT v1 · #129643 · protein

PHD2 and winged-helix domain of polycomblike

5OQD: “PHD2 and winged-helix domain of polycomblike”. X-ray diffraction, 2 ligands (ZN, PO4). MolNFT v1 #129643 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5OQD
Type: protein
Length: 1,121 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q24459
Ligands: ZN, PO4

Structure

x-ray diffraction · 6 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	—	protein	186	—	Q24459
A	—	protein	184	—	Q24459
C	—	protein	192	—	Q24459
D	—	protein	187	—	Q24459
E	—	protein	180	—	Q24459
F	—	protein	192	—	Q24459

Ligands and binding sites

ZN · Zinc ion · metal · 12 copies · chains B, A, C, D, E, F
PO4 · Phosphate ion · ion · 2 copies · chains C, B, A, D
EDO · 1,2-ethanediol · additive · 5 copies · chains B, C, F

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5OQD · PHD2 and winged-helix domain of Polycomblike · the same entry in another collection · chain F against F, TM-score 1.00
Q24459 · AlphaFold monomer V2.0 prediction for polycomb protein pcl (Q24459) · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q24459
Elsewhere: RCSB PDB 5OQD · PDBe 5OQD · UniProt Q24459

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