MolNFT v1 · #12962 · protein
Minimized average structure of a mono-heme ferrocytochrome C from shewanella putrefaciens
1KX2 · Mono-heme C-type cytochrome scya: “Minimized average structure of a mono-heme ferrocytochrome C from shewanella putrefaciens”. Solution nmr, 1 ligand (HEC), 1 pocket (best druggability 0.64). MolNFT v1 #12962 on GenesisL1: 3D…
- PDB
- 1KX2
- Type
- protein
- Length
- 81 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mono-heme C-type cytochrome scya
- UniProt
- O52685
- Ligands
- HEC
- Pockets
- 1 · best druggability 0.64
Structure
solution nmr · 1 distinct chain · 44% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mono-heme C-type cytochrome scya | protein | 81 | 44% helix, 0% strand | O52685 |
Ligands and binding sites
- HEC · Heme C · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 213 | 0.64 | 0.83 | 34 | HEC |
Modifications
Observed in the structure: 2 cofactor, 1 disulfide (heme c attachment, disulfide).
Compared structures
- 1KX2 · Minimized average structure of a mono-heme ferrocytochrome c from Shewanella putrefaciens · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O52685
- Elsewhere: RCSB PDB 1KX2 · PDBe 1KX2 · UniProt O52685
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