MolNFT v1 · #129593 · protein
Crystal structure of lobe II from the nucleotide binding domain of dnak in complex with amppcp
5OOW: “Crystal structure of lobe II from the nucleotide binding domain of dnak in complex with amppcp”. X-ray diffraction, 1 ligand (ACP). MolNFT v1 #129593 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5OOW
- Type
- protein
- Length
- 365 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0A6Y8
- Ligands
- ACP
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 182 | — | P0A6Y8 |
| B | — | protein | 183 | — | P0A6Y8 |
Ligands and binding sites
- ACP · Phosphomethylphosphonic acid adenylate ester · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5OOW · Crystal structure of lobe II from the nucleotide binding domain of DnaK in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
- P0A6Y8 · AlphaFold monomer V2.0 prediction for chaperone protein dnak (P0A6Y8) · a predicted model of the same protein · chain B against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A6Y8
- Elsewhere: RCSB PDB 5OOW · PDBe 5OOW · UniProt P0A6Y8
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