MolNFT v1 · #129444 · protein
Conservatively refined structure of GAN1D-wt, a putative 6-phospho- beta-galactosidase from geobacillus stearothermophilus, in complex with 6-phospho-beta-galactose
5OKK: “Conservatively refined structure of GAN1D-wt, a putative 6-phospho- beta-galactosidase from geobacillus…”. X-ray diffraction, 1 ligand (BGP). MolNFT v1 #129444 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5OKK
- Type
- protein
- Length
- 948 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- W8QF82
- Ligands
- BGP
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 474 | — | W8QF82 |
Ligands and binding sites
- BGP · 6-O-phosphono-beta-D-galactopyranose · ligand · 2 copies · chains A, B
- GOL · Glycerol · additive · 10 copies · chains A, B
- IMD · Imidazole · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5OKK · Conservatively refined structure of Gan1D-WT, a putative 6-phospho-beta-galactosidase… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt W8QF82
- Elsewhere: RCSB PDB 5OKK · PDBe 5OKK · UniProt W8QF82
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