MolNFT v1 · #129424 · protein
D10N variant of beta-phosphoglucomutase from lactococcus lactis inhibited by a beryllium triflouride phosphoenzyme analogue to 1.3A resolution.
5OJZ: “D10N variant of beta-phosphoglucomutase from lactococcus lactis inhibited by a beryllium triflouride…”. X-ray diffraction, 2 ligands (BEF, MG), 1 pocket (best druggability 0.66). MolNFT v1 #129424 on GenesisL1: 3D structure, binding…
- PDB
- 5OJZ
- Type
- protein
- Length
- 220 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-phosphoglucomutase
- EC
- 5.4.2.6
- UniProt
- P71447
- Ligands
- BEF, MG
- Pockets
- 1 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 54% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-phosphoglucomutase (EC 5.4.2.6) | protein | 220 | 54% helix, 11% strand | P71447 |
Ligands and binding sites
- BEF · Beryllium trifluoride ion · ligand · chains A
- MG · Magnesium ion · metal · 2 copies · chains A
- EDO · 1,2-ethanediol · additive · 10 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 480 | 0.66 | 0.78 | 39 | BEF, EDO |
Compared structures
- 5OJZ · D10N variant of beta-phosphoglucomutase from Lactococcus lactis inhibited by a beryllium… · the same entry in another collection · chain A against A, TM-score 1.00
- P71447 · AlphaFold monomer V2.0 prediction for beta-phosphoglucomutase (P71447) · a predicted model of the same protein · chain A against A, TM-score 0.88
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P71447
- Elsewhere: RCSB PDB 5OJZ · PDBe 5OJZ · UniProt P71447
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.